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Crystal structure of the full-length vaccinia virus mRNA capping enzyme (D1/D12 heterodimer) in the context of three catalytic modules (RNA triphosphatase or TPase, guanylyltransferase or GTase, and guanine-N7-methyltransferase or MTase) used sequentially for caps synthesis.
The TPase module is a triphosphate-tunnel metalloenzyme with a basic roof and an acidic floor to coordinate the γ-phosphate of the nascent RNA through Lys161 and Glu126, respectively. The GTase module has a closed NTase–OB-fold conformation that is locked by an extensive 2155 Ų TPase–GTase interface. Disruption of this interface by mutations of interfacial residues L47A-L50A-T51A or K478A results in the loss of GTase activity without affecting TPase activity, indicating the allosteric coupling of the two modules. GTP is bound in the GTase active site in a suboptimal geometry, and must be repositioned upon Mg2+ binding for Lys260 nucleophilic attack. The MTase domain is connected to the other modules through a flexible linker and is primed for activity by D12, a degenerate 2′-O-methyltransferase homolog that locks the AdoMet-binding helix αK in place.
Fig. 1 Crystal Structure of Vaccinia Virus mRNA Capping Enzyme. (Kyrieleis O J P.; et al. 2014)
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